1. Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets
    Benjamin Billot, Magdamo Colin, You Cheng, and 2 more authors
    Proceedings of the National Academy of Sciences (PNAS), 2023
  2. SynthSR: A public AI tool to turn heterogeneous clinical brain scans into high-resolution T1-weighted images for 3D morphometry
    Juan E. Iglesias, Benjamin Billot, Yaël Balbastre, and 7 more authors
    Science Advances, 2023
  3. SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining
    Benjamin Billot, Douglas N. Greve, Oula Puonti, and 5 more authors
    Medical Image Analysis, 2023
  4. Equivariant and Denoising CNNs to Decouple Intensity and Spatial Features for Motion Tracking in Fetal Brain MRI
    Benjamin Billot, Daniel Moyer, Neerav Karani, and 4 more authors
    In MIDL short paper track, 2023
  5. AnyStar: Domain randomized universal star-convex 3D instance segmentation
    Neel Dey, Mazdak Abulnaga, Benjamin Billot, and 4 more authors
    In Winter Conference on Applications of Computer Vision, 2023
  6. Quantitative Brain Morphometry of Portable Low-Field-Strength MRI Using Super-Resolution Machine Learning
    Juan Eugenio Iglesias, Riana Schleicher, Sonia Laguna, and 7 more authors
    Radiology, 2023


  1. Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining
    Benjamin Billot, Magdamo Colin, Steven E Arnold, and 2 more authors
    In MICCAI, 2022
  2. SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images
    Malte Hoffmann, Benjamin Billot, Douglas N. Greve, and 3 more authors
    IEEE Transactions on Medical Imaging, 2022
  3. In vivo hypothalamic regional volumetry across the frontotemporal dementia spectrum
    Noah Shapiro, Emily Todd, Benjamin Billot, and 5 more authors
    NeuroImage, 2022
  4. Super-resolution of portable low-field MRI in real scenarios: integration with denoising and domain adaptation
    Sonia Laguna, Riana Schleicher, Benjamin Billot, and 7 more authors
    In MIDL, 2022


  1. Joint Segmentation Of Multiple Sclerosis Lesions And Brain Anatomy In MRI Scans Of Any Contrast And Resolution With CNNs
    Benjamin Billot, Stefano Cerri, Koen Van Leemput, and 2 more authors
    In ISBI, 2021
  2. Joint super-resolution and synthesis of 1mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast
    Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, and 7 more authors
    NeuroImage, 2021
  3. A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images
    Douglas N. Greve, Benjamin Billot, Devani Cordero, and 6 more authors
    NeuroImage, 2021


  1. Partial Volume Segmentation of Brain MRI Scans of Any Resolution and Contrast
    Benjamin Billot, Eleanor Robinson, Adrian V. Dalca, and 1 more author
    In MICCAI, 2020
  2. A Learning Strategy for Contrast-agnostic MRI Segmentation
    Benjamin Billot, Douglas N. Greve, Koen Van Leemput, and 3 more authors
    In MIDL, 2020
  3. Automated segmentation of the hypothalamus and associated subunits in brain MRI
    Benjamin Billot, Martina Bocchetta, Emily Todd, and 3 more authors
    NeuroImage, 2020